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 ~ AceBrowser Enhancements at UK CropNet

AceBrowser Enhancements - PCM Display
This display uses a Java applet to get round some of the problems inherent in the ACEDB multimap display, it also provides an alternative display for normal maps.

For example: BrassicaDB multimap

The display is in two parts:

  1. The Java applet as a jar: PCM_1.1.jar
  2. The AceBrowser display which generates the required data files: PCM

I think the code is relativly self-explanatory. However there are a couple of configurables in the AceBrowser display that may need changing.

my $map_table_query = 'table -n map.point ';
my $homol_table_query = 'table -n probe.map.pos ';

These two variables define how to get the table of map positions and homologies. The tables are described in some detail in the GFace User's Guide (map.point & probe.map.pos).

It may also be necessary to change the APPLET tag for your site.


 ~ Links

Bioinformatics Research Group
UK CropNet group at John Innes Centre

John Innes Centre
Home to BrassicaDB & MilletGenes

AceBrowser
Developed by Lincoln Stein

ACEDB
ACEDB site at Sanger Centre

NASC
Nottingham Arabidopsis Stock Centre

SCRI
Scottish Crop Research Institute

IGER
Institute of Grassland and Environmental Research


Contact us
Please email us if you have any questions.



Page last modified: Friday, 16-Mar-2001 16:18:57 GMT
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